Merge branch 'master' of github.com:khoj-ai/khoj into improve-debug-reasoning-and-other-misc-fixes

src/khoj/processor/conversation/anthropic/anthropic_chat.py

@@ -189,7 +189,7 @@ def converse_anthropic(
     if ConversationCommand.Online in conversation_commands or ConversationCommand.Webpage in conversation_commands:
         context_message += f"{prompts.online_search_conversation.format(online_results=yaml_dump(online_results))}\n\n"
     if ConversationCommand.Code in conversation_commands and not is_none_or_empty(code_results):
-        context_message += f"{prompts.code_executed_context.format(code_results=yaml_dump(code_results))}\n\n"
+        context_message += f"{prompts.code_executed_context.format(code_results=str(code_results))}\n\n"
     context_message = context_message.strip()
 
     # Setup Prompt with Primer or Conversation History

src/khoj/processor/conversation/google/gemini_chat.py

@@ -116,8 +116,10 @@ def gemini_send_message_to_model(
     messages, system_prompt = format_messages_for_gemini(messages)
 
     model_kwargs = {}
-    if response_type == "json_object":
+
-        model_kwargs["response_mime_type"] = "application/json"
+    # Sometimes, this causes unwanted behavior and terminates response early. Disable for now while it's flaky.
+    # if response_type == "json_object":
+    #     model_kwargs["response_mime_type"] = "application/json"
 
     # Get Response from Gemini
     return gemini_completion_with_backoff(
@@ -193,7 +195,7 @@ def converse_gemini(
     if ConversationCommand.Online in conversation_commands or ConversationCommand.Webpage in conversation_commands:
         context_message += f"{prompts.online_search_conversation.format(online_results=yaml_dump(online_results))}\n\n"
     if ConversationCommand.Code in conversation_commands and not is_none_or_empty(code_results):
-        context_message += f"{prompts.code_executed_context.format(code_results=yaml_dump(code_results))}\n\n"
+        context_message += f"{prompts.code_executed_context.format(code_results=str(code_results))}\n\n"
     context_message = context_message.strip()
 
     # Setup Prompt with Primer or Conversation History

src/khoj/processor/conversation/offline/chat_model.py

@@ -160,9 +160,7 @@ def converse_offline(
     # Initialize Variables
     assert loaded_model is None or isinstance(loaded_model, Llama), "loaded_model must be of type Llama, if configured"
     offline_chat_model = loaded_model or download_model(model, max_tokens=max_prompt_size)
-    compiled_references = "\n\n".join({f"# File: {item['file']}\n## {item['compiled']}\n" for item in references})
     tracer["chat_model"] = model
-
     current_date = datetime.now()
 
     if agent and agent.personality:
@@ -204,7 +202,7 @@ def converse_offline(
 
         context_message += f"{prompts.online_search_conversation_offline.format(online_results=yaml_dump(simplified_online_results))}\n\n"
     if ConversationCommand.Code in conversation_commands and not is_none_or_empty(code_results):
-        context_message += f"{prompts.code_executed_context.format(code_results=yaml_dump(code_results))}\n\n"
+        context_message += f"{prompts.code_executed_context.format(code_results=str(code_results))}\n\n"
     context_message = context_message.strip()
 
     # Setup Prompt with Primer or Conversation History

src/khoj/processor/conversation/openai/gpt.py

@@ -191,7 +191,7 @@ def converse(
     if not is_none_or_empty(online_results):
         context_message += f"{prompts.online_search_conversation.format(online_results=yaml_dump(online_results))}\n\n"
     if not is_none_or_empty(code_results):
-        context_message += f"{prompts.code_executed_context.format(code_results=yaml_dump(code_results))}\n\n"
+        context_message += f"{prompts.code_executed_context.format(code_results=str(code_results))}\n\n"
     context_message = context_message.strip()
 
     # Setup Prompt with Primer or Conversation History

src/khoj/processor/conversation/utils.py

@@ -22,7 +22,7 @@ from langchain.schema import ChatMessage
 from llama_cpp.llama import Llama
 from transformers import AutoTokenizer
 
-from khoj.database.adapters import ConversationAdapters, ais_user_subscribed
+from khoj.database.adapters import ConversationAdapters
 from khoj.database.models import ChatModelOptions, ClientApplication, KhojUser
 from khoj.processor.conversation import prompts
 from khoj.processor.conversation.offline.utils import download_model, infer_max_tokens
@@ -457,6 +457,11 @@ def clean_json(response: str):
     return response.strip().replace("\n", "").removeprefix("```json").removesuffix("```")
 
 
+def clean_code_python(code: str):
+    """Remove any markdown codeblock and newline formatting if present. Useful for non schema enforceable models"""
+    return code.strip().removeprefix("```python").removesuffix("```")
+
+
 def defilter_query(query: str):
     """Remove any query filters in query"""
     defiltered_query = query

src/khoj/processor/tools/run_code.py

@@ -12,6 +12,7 @@ from khoj.database.models import Agent, KhojUser
 from khoj.processor.conversation import prompts
 from khoj.processor.conversation.utils import (
     ChatEvent,
+    clean_code_python,
     clean_json,
     construct_chat_history,
 )
@@ -126,13 +127,18 @@ async def execute_sandboxed_python(code: str, sandbox_url: str = SANDBOX_URL) ->
     Returns the result of the code execution as a dictionary.
     """
     headers = {"Content-Type": "application/json"}
-    data = {"code": code}
+    cleaned_code = clean_code_python(code)
+    data = {"code": cleaned_code}
 
     async with aiohttp.ClientSession() as session:
         async with session.post(sandbox_url, json=data, headers=headers) as response:
             if response.status == 200:
                 result: dict[str, Any] = await response.json()
-                result["code"] = code
+                result["code"] = cleaned_code
                 return result
             else:
-                return {"code": code, "success": False, "std_err": f"Failed to execute code with {response.status}"}
+                return {
+                    "code": cleaned_code,
+                    "success": False,
+                    "std_err": f"Failed to execute code with {response.status}",
+                }

src/khoj/routers/api_chat.py

@@ -710,7 +710,6 @@ async def chat(
         meta_log = conversation.conversation_log
         is_automated_task = conversation_commands == [ConversationCommand.AutomatedTask]
 
-        pending_research = True
         researched_results = ""
         online_results: Dict = dict()
         code_results: Dict = dict()
@@ -730,6 +729,16 @@ async def chat(
                 tracer=tracer,
             )
 
+            # If we're doing research, we don't want to do anything else
+            if ConversationCommand.Research in conversation_commands:
+                conversation_commands = [ConversationCommand.Research]
+
+            conversation_commands_str = ", ".join([cmd.value for cmd in conversation_commands])
+            async for result in send_event(
+                ChatEvent.STATUS, f"**Chose Data Sources to Search:** {conversation_commands_str}"
+            ):
+                yield result
+
             mode = await aget_relevant_output_modes(
                 q, meta_log, is_automated_task, user, uploaded_images, agent, tracer=tracer
             )
@@ -759,7 +768,6 @@ async def chat(
             ):
                 if isinstance(research_result, InformationCollectionIteration):
                     if research_result.summarizedResult:
-                        pending_research = False
                         if research_result.onlineContext:
                             online_results.update(research_result.onlineContext)
                         if research_result.codeContext:
@@ -773,10 +781,11 @@ async def chat(
                     yield research_result
 
             # researched_results = await extract_relevant_info(q, researched_results, agent)
-
             logger.info(f"Researched Results: {researched_results}")
 
-            pending_research = False
+        for cmd in conversation_commands:
+            await conversation_command_rate_limiter.update_and_check_if_valid(request, cmd)
+            q = q.replace(f"/{cmd.value}", "").strip()
 
         used_slash_summarize = conversation_commands == [ConversationCommand.Summarize]
         file_filters = conversation.file_filters if conversation else []
@@ -788,11 +797,9 @@ async def chat(
             and not used_slash_summarize
             # but we can't actually summarize
             and len(file_filters) != 1
-            # not pending research
-            and not pending_research
         ):
             conversation_commands.remove(ConversationCommand.Summarize)
-        elif ConversationCommand.Summarize in conversation_commands and pending_research:
+        elif ConversationCommand.Summarize in conversation_commands:
             response_log = ""
             agent_has_entries = await EntryAdapters.aagent_has_entries(agent)
             if len(file_filters) == 0 and not agent_has_entries:
@@ -886,7 +893,7 @@ async def chat(
 
         # Gather Context
         ## Extract Document References
-        if pending_research:
+        if not ConversationCommand.Research in conversation_commands:
             try:
                 async for result in extract_references_and_questions(
                     request,
@@ -933,7 +940,6 @@ async def chat(
         if ConversationCommand.Notes in conversation_commands and is_none_or_empty(compiled_references):
             conversation_commands.remove(ConversationCommand.Notes)
 
-        if pending_research:
         ## Gather Online References
         if ConversationCommand.Online in conversation_commands:
             try:
@@ -960,7 +966,6 @@ async def chat(
                 ):
                     yield result
 
-        if pending_research:
         ## Gather Webpage References
         if ConversationCommand.Webpage in conversation_commands:
             try:
@@ -999,9 +1004,8 @@ async def chat(
                 ):
                     yield result
 
-        if pending_research:
         ## Gather Code Results
-            if ConversationCommand.Code in conversation_commands and pending_research:
+        if ConversationCommand.Code in conversation_commands:
             try:
                 context = f"# Iteration 1:\n#---\nNotes:\n{compiled_references}\n\nOnline Results:{online_results}"
                 async for result in run_code(

src/khoj/utils/helpers.py

@@ -364,7 +364,6 @@ tool_descriptions_for_llm = {
     ConversationCommand.Webpage: "To use if the user has directly provided the webpage urls or you are certain of the webpage urls to read.",
     ConversationCommand.Code: "To run Python code in a Pyodide sandbox with no network access. Helpful when need to parse information, run complex calculations, create documents and charts for user. Matplotlib, bs4, pandas, numpy, etc. are available.",
     ConversationCommand.Summarize: "To retrieve an answer that depends on the entire document or a large text.",
-    ConversationCommand.Research: "To use when you need to do DEEP research on a topic. This will take longer than usual, but give a more detailed, comprehensive answer.",
 }
 
 function_calling_description_for_llm = {