- Text before headings was not being indexed due to buggy orgnode
parsing logic
- Resolved indexing intro text from files with and without headings in
them
- Ensure intro text node has heading set to all title lines collected
from the file
Resolves#165
- Test /config/types API when no plugin configured, only plugin configured
and no content configured scenarios
- Do not throw null reference exception while configuring search types
when no plugin configured
- Do not throw null reference exception on calling /config/types API
when no plugin configured
Resolves bug introduced by #173
Repro:
1. Open khoj server with `khoj` on first run
2. Install/enable Khoj Obsidian plugin (to configure khoj server)
3. Restart khoj server with `khoj`
Bug:
- Unconfigured processor and search_types are instantiated as None in
self.current_config
- While creating the desktop GUI, these null configs are attempted to
be accessed as valid dictionaries for creating their GUI panels
- This results in the null ref errors
Fix:
Use default config to create their GUI elements for unconfigured
search and processor types
Resolves#167
- Previously was return all core content types even if they had not been
setup
- Add test to validate only configured content types are returned by
the api/config/types API endpoint
- Remove need for interfaces to downcase content types returned by API
before using the type in search and other API endpoint
- Fix to check for search_type.name in plugin keys instead of value
Configure app routes after configuring server.
Import API routers after search type is dynamically populated.
Allow API to recognize the dynamically populated plugin search types
as valid type query param.
Enable searching for plugin type content.
- Remove unneeded type ignore for mps with the latest mypy
- Stop excluding PyQT desktop GUI code from MyPy checks
- Do not warn about unused ignores. Some issue with mypy giving
different errors in different environments (venv, system and pre-commit)
- Use Rich to render uvicorn, fastAPI logs as well
The previous CustomFormatter only worked on khoj logs
- Improve rendering stacktrace on errors using Rich
- What
- The Emacs and Obsidian interfaces stay in their original
directories under src/
- src/khoj now only contains code meant for pypi packaging
- Benefits
- This avoids having to update khoj MELPA, Obsidian plugin config as
the Emacs, Obsidian code is under their original directories
- It separates the code in src/khoj meant for python packaging from
code for external interfaces like Emacs and Obsidian
- Why
The khoj pypi packages should be installed in `khoj' directory.
Previously it was being installed into `src' directory, which is a
generic top level directory name that is discouraged from being used
- Changes
- move src/* to src/khoj/*
- update `setup.py' to `find_packages' in `src' instead of project root
- rename imports to form `from khoj.*' in complete project
- update `constants.web_directory' path to use `khoj' directory
- rename root logger to `khoj' in `main.py'
- fix image_search tests to use the newly rename `khoj' logger
- update config, docs, workflows to reference new path `src/khoj'
- By default the obsidian plugin automatically configures the khoj
backend to index the current vault
- For more complex scenarios, users can manage their ~/.khoj/khoj.yml
manually by toggling the auto-configure setting off in the khoj
plugin settings
Resolves#156
- Background
1. Obsidian stores markdown notes as utf8[1]
2. By default, the python `open' command uses the OS locale encoding[2]
This was causing the `UnicodeDecodeError: <locale_encoding> codec can't decode byte' error
- Fix
- Read markdown files as utf8
The Obsidian plugin is the main use-case for markdown files in
khoj currently and that stores md files as utf8.
Do not assume utf8 for other content types like org-mode, beancount for now.
- Fail if error in reading file as utf8, instead of ignoring errors.
Would rather have user realize that their files are not going to
get indexed correctly.
[1]: https://forum.obsidian.md/t/better-handle-md-files-not-stored-in-utf8-format/13524/3
[2]: https://docs.python.org/3/library/functions.html#open
Khoj plugin page from within Obsidian isn't recognized. Seems like it
needs an uppercase readme file only. So it doesn't show the Khoj
readme from within Obsidian itself.
- Update khoj.el test to reflect updated rendering logic
- Move ledger render function before image rendered to group functions
with similar logic closer
Split find file, jump to file code to make onChooseSuggestion more readable
- Use find, instead of using return in forEach to get first match
- Move the jump to file+heading code out from forEach
Do not reference global app object from child objects and funcs
directly.
It is only available for debugging purposes and access to it maybe
dropped in the future.
Previously no query syntax helpers, like the "file:" prefix, were used
before checking if query contains file path.
This made query to image search brittle to misinterpretation and
pointless checking
Add test to verify search by image at file works as expected
- Support querying with text surrounding point in any text buffer
Previously could only find items similar to org entry at point
- Find similar items of specified content type indexed on khoj
Previously only looked for similar org entries indexed on khoj
Now uses the content-type configured in khoj transient menu to find
items of the specified content type
- Details
- Generalize the get-current-org-entry-text func to get text for any
outline section
- Replace leading whitespaces from query text as well
- Create method to get current paragraph text from non-outline mode
buffers
- Update transient, find-similar funcs to pass, use content-type
configured in khoj transient menu
- Generalize query title creation logic to remove markdown headings
prefix (#) apart from org heading prefix (*) as well
- Update last used khoj content-type and results from the
find-similar and update funcs for later reuse
- Jump to top of results buffer after results rendered
Enable searching for notes similar to the current note being viewed
## Main Changes
- 39a18e2 Extend search modal to search for similar notes
- Hide input field on init, Trigger search on opening modal when in similar notes mode
- Set input to contents of current markdown file and get notes similar to it
- Re-rank, by default, when searching for similar notes
- Filter out current note from similar note search results
- 0bed410 Only show `Find Similar Note' command in Editor
- Hide input field on init, Trigger search on opening modal in similar notes mode
- Set input to current markdown file and get similar notes to it
- Enable rerank when searching for similar notes
- Filter out current note from similar note search results
- Screenshot querying "Setup Editor" on test vault with Khoj Readmes
- New features showcase:
- information keybindings, rerank keybinding at bottom of modal
- fixed top level headings in search results
- search results snipped if greater than N words
- Previously top level headings would have get stripped of the
space between heading text and the prefix # symbols. That is,
`# Top Level Heading' would get converted to `#Top Level Heading'
- This would mess up their rendering as a heading in search results
- Add unit tests to text_to_jsonl processors to prevent regression
Provides a more consistent rendering of results in modal.
Makes it easier to see more results in modal.
To see complete entry, user can always just jump to entry from modal
### Overview
- Provide a chat interface to engage with and inquire your notes
- Simplify interacting with the beta `chat` and `summarize` APIs
### Use
- Open `<khoj-url>/chat`, by default at http://localhost:8000/chat?type=summarize
- Type your queries, see summarized response by Khoj from your notes
**Note**:
- **You will need to add an API key from OpenAI to your khoj.yml**
- **Your query and top note from search result will be sent to OpenAI for processing**
## Details
- 177756b Show chat history on loading chat page on web interface
- d8ee0f0 Save chat history to disk for persistence, seeing chat logs
- 5294693 Style chat messages as speech bubbles
- d170747 Add khoj web interface and chat styling to new chat page on khoj web
- de6c146 Implement functional, unstyled chat page for khoj web interface
- The previous mechanism to trigger saving on shutdown event did not work
- Use scheduler to persist chat sessions to disk at a 5 minute interval
- This improve time granularity, fixed interval of saving chat logs
- It may lose ~5 minutes of chat history until mechanism to also
write on shutdown found/resolved
- Create conversation directory if it doesn't exist before attempting write
- Reset chat_session after writing it to disk
- Wrap messages into speech bubbles
- Color messages by khoj blue, sender grey
- Add those standard protrusions to the speech bubbles for fun
- Align bubbles left or right based on sender
- messages by khoj are left aligned, message by self are right aligned
- Put message metadata like sender and time under speech bubble
- use data-* attribute and ::after css pseudo-selector for this
- Update renderMessage func to accept time param, remove unused type_ param
Not all notes are in the past. Notes can be about stuff in the future.
Casting them to past tense gives the impression that they've already
happened / been done.
- Changes
- Use blue color for khoj heading font
- This fixes the title color issue
- Update background to lighter shade
- This fixes the body text color issue
- Update colors for todo, done, miscellaneous todo state, tag color
- This does not fix the color contrast issue but seems like an acceptable solution
- Using white text rather than black text on blue background
better even though the black text on blue background passes the
WCAG acceptable contrast score
- For details see blog post:
https://uxmovement.com/buttons/the-myths-of-color-contrast-accessibility/
- Add border to tags to give them tag pills look and differntiate
from todo states
- Buttons and inputs
- Change background color of input fields like type dropdown,
update button and results count counter, to match background
color of page
- Add shadow on hover over button, dropdowns
Resolves#111
- Ensure message input box sticks to bottom of screen
- Ensure chat logs div is scrollable when logs become longer than screen
Do not make the whole page scroll, just the chat logs body div
Uses longest file path match to find markdown file in vault
corresponding to file of search result returned by Khoj
Allow jumping to search result from khoj plugin modal on Android too
Previous mechanism of manually triggering getSuggestions,
renderSuggestions flow was corrupting traversing and opening
reranked search results in KhojModal
Emulate event that would anyway trigger the get & render of results in
modal. This lets obsidian core handle the flow without digging too
deep into obsidian cores handling of the flow. Lowers the chance of
breakage
We need the index file paths to make sense on the khoj backend server
Having path of index on backend relative to current vault directory
on frontend ignores the fact that the frontend maybe on a different
machine than the khoj backend server
Using unique index name per vault allows switching vaults without
overwriting indices of other vaults created on khoj backend when khoj
obsidian plugin is loaded on opening a different vault
- Overview
Limits using Khoj with a single vault at a time. This is
automatically configured to the most recently opened vault.
Once directory filters are supported on backend, the plugin will be
updated to index multiple vault but search only current vault from
current vaults khoj obsidian plugin
- Code Details
- Remove setting to configure Vault directory from Khoj Obsidian plugin
- Automatically configure Khoj to index only current Vault.
- Overwrites any previous vaults that were intended to be indexed by
Khoj backend
- Force update of index after configuring vault
- Why
It's not helpful for now and can lead to more problems, confusion.
Once directory filters
- Previously the backend was just throwing backend error.
The frontend calling the /update API wasn't getting notified
- Now the frontend can react appropriately and make the issue
visible to the user
- Only show notification on plugin load and failure.
- In settings page, set current backend status at top of pane instead
of showing notification
Notices bubbles cluttered the UI while typing updates to settings
- Show notification once index updated via settings pane button click
There was no notification on index updated, which usually takes time
on the backend
- Display warning at top of khoj obsidian plugin settings
- Make search command available only if connected to backend
- Show warning notice on clicking khoj search ribbon button
- Call saveData after configureKhojBackend to ensure
connnectedToBackend setting saved after being (potentially) updated
in configureKhojBackend function
- Previously the plugin would not load if cannot connect to Khoj backend
- Silently failing to load with no reason provided is not helpful
- Load plugin to allow user to fix the Khoj URL in their plugin setting
- Show reason for khoj plugin not working. More helpful than failing silently
Use the timer context manager in all places where code was being timed
- Benefits
- Deduplicate timing code scattered across codebase.
- Provides single place to manage perf timing code
- Use consistent timing log patterns
The query method had become too big.
Extract out filter, score, sort and deduplicate logic used by
text_search.query into separate methods.
This should improve readabilty of code.
- Changes
- Fix method signatures of BaseFilter subclasses.
Else typing information isn't translating to them
- Explicitly pass `entries: list[Entry]' as arg to `load' method
- Fix type of `raw_entries' arg to `apply' method
to list[Entry] from list[str]
- Rename `raw_entries' arg to `apply' method to `entries'
- Fix `raw_query' arg used in `apply' method of subclasses to `query'
- Set type of entries, corpus_embeddings in TextSearchModel
- Verification
Ran `mypy --config-file .mypy.ini src' to verify typing
- `torch.Tensor' is apparently a legacy tensor constructor
- Using that to create tensor on MPS devices throws error:
RuntimeError: legacy constructor expects device type: cpu but device type: mps was passed
- `torch.tensor' can handle creating tensors on Mac GPU (MPS) fine
This is unlike the more general chat API that combines summarization
of top search result and conversing with the OpenAI model
This should give faster summary results. As no intent categorization
API call required
- Use latest davinci model for tests
- Wrap prompt in triple quotes to improve legibilty
- `understand' method returns dictionary instead of string. Fix its test
- Fix prompt for new model to pass `chat_with_history' test
- Default to using `text-davinci-003' if conversation model not
explicitly configured by user. Stop using the older `davinci' and
`davinci-instruct' models
- Use `model' instead of `engine' as parameter.
Usage of `engine' parameter in OpenAI API is deprecated
- Init processor before search to instantiate `openai_api_key'
from `khoj.yml'. The key is used to configure search with openai models
- To use OpenAI models for search in Khoj
- Set `encoder' to name of an OpenAI model. E.g text-embedding-ada-002
- Set `encoder-type' in `khoj.yml' to `src.utils.models.OpenAI'
- Set `model-directory' to `null', as online model cannot be stored on disk
Long words (>500 characters) provide less useful context to models.
Dropping very long words allow models to create better embeddings by
passing more of the useful context from the entry to the model
- Previously `model_type' was set in the setup of each `search_type'
- All encoders were of type `SentenceTransformer'
- All cross_encoders were of type `CrossEncoder'
- Now `encoder-type' can be configured via the new `encoder_type' field
in `TextSearchConfig' under `search-type` in `khoj.yml`.
- All the specified `encoder-type' class needs is an `encode' method
that takes entries and returns embedding vectors
- Ensure all tensors are on MPS device before doing operations across them
- Background
- GPU is used by default for Khoj on MacOS now
- Needed PyTorch > 1.13.0 on Macs to use GPU, which we do now
- MPS should speed up search and indexing on MacOS
Fix usage warning for unescaped single quote in `khoj.el' docstring.
Converts usage of '<text>' into `<text>' to use the correct quote forms in generated docs
⛔ Warning (comp): khoj.el:119:2: Warning: docstring has wrong usage of unescaped single quotes (use \= or different quoting)
⛔ Warning (comp): khoj.el:120:2: Warning: docstring has wrong usage of unescaped single quotes (use \= or different quoting)
⛔ Warning (comp): khoj.el:121:2: Warning: docstring has wrong usage of unescaped single quotes (use \= or different quoting)
⛔ Warning (comp): khoj.el:168:2: Warning: docstring has wrong usage of unescaped single quotes (use \= or different quoting)
- Features
- Search using Khoj from within the Obsidian app
Allow Natural language search on your (markdown) notes in Obsidian Vault
- Show search results as rendered (instead of raw) Markdown
Improve legibility of the results
- Jump to selected note from search result in Khoj search modal
Simplify seeing result within its original note context
- Automatically configure khoj to index markdown files in current vault
Reduce khoj setup steps for plugin users by using reasonable defaults
- Code updates the markdown config in khoj.yml and triggers index update
- It can be configured by user in khoj plugin settings, if required
- Add Demo and detailed Readme for the Obsidian plugin
Ease setup and usage. Give context about capabilities
- Miscellaneous
- Trying keep a mono repo until the Khoj project is mature enough
to reduce maintainance burden
This can ease configuring khoj from the different interfaces
- Don't need to know all the (default) config used by khoj.
- Just get default config by calling the above API endpoint.
- Then modify desired portions and call POST /api/config/data to
configure khoj.
- Start khoj server (in non-GUI mode) without needing config file
already instantiated.
- But throw warning to configure khoj to use it
- This allows plugins to configure the app via the /config/data APIs
- To be used by the Khoj obsidian plugin to configure markdown content
in khoj
- Poll scheduler every minute using threading.Timer
- Use 60 seconds polling interval to avoid fork bombing
- Schedule next via the same poll scheduler
- Allow clean program interrupt by running scheduler in daemon mode
- There are 3 paths to updating/setting the index (stored in state.model)
- App start
- API
- Scheduler
- Put all updates to the index behind a lock. As multiple updates path
that could (potentially) run at the same time (via API or Scheduler)
- Remove property drawer from test entry for max_words splitting test
- Property drawer is not required for the test
- Keep minimal test case to reduce chance for confusion
- Required because entries are now split by the max_word count supported
by the ML models
- This would now result in potentially duplicate hits, entries being
returned to user
- Do deduplication after ranking to get the top ranked deduplicated
results
- The instructions suggest installing khoj-assistant via pip install.
This installs the latest tagged/release version of khoj
- To match that version user should install khoj.el from MELPA stable
instead of MELPA
- Issue
ML Models truncate entries exceeding some max token limit.
This lowers the quality of search results
- Fix
Split entries by max tokens before indexing.
This should improve searching for content in longer entries.
- Miscellaneous
- Test method to split entries by max tokens
Update readme to ask user to install khoj.el from MELPA when a
pre-release version of the main khoj app is installed. Else install
khoj.el from MELPA Stable
- Reason
- All clients that currently consume the API are part of Khoj
- Any breaking API changes will be fixed in clients immediately
- So decoupling client from API is not required
- This removes the burden of maintaining muliple versions of the API
- Context
- The app maintains all text content in a standard, intermediate format
- The intermediate format was loaded, passed around as a dictionary
for easier, faster updates to the intermediate format schema initially
- The intermediate format is reasonably stable now, given it's usage
by all 3 text content types currently implemented
- Changes
- Concretize text entries into `Entries' class instead of using dictionaries
- Code is updated to load, pass around entries as `Entries' objects
instead of as dictionaries
- `text_search' and `text_to_jsonl' methods are annotated with
type hints for the new `Entries' type
- Code and Tests referencing entries are updated to use class style
access patterns instead of the previous dictionary access patterns
- Move `mark_entries_for_update' method into `TextToJsonl' base class
- This is a more natural location for the method as it is only
(to be) used by `text_to_jsonl' classes
- Avoid circular reference issues on importing `Entries' class
- Both Text, Image Search were already giving list of entry, score
- This change just concretizes this change and exposes this in the API
documentation (i.e OpenAPI, Swagger, Redocs)
- Split router.py into v1.0, beta and frontend (no-prefix) api modules
under new router package. Version tag in main.py via prefix
- Update frontends to use the versioned api endpoints
- Update tests to work with versioned api endpoints
- Update docs to mentioned, reference only versioned api endpoints
In my installation, it appears that `url-request-method` is sometimes set
globally to POST. Need to explicitly set it to ensure that GET is always
used as intended.
- Pass force=true to /update API to force regenerating index from
scratch
- Otherwise calls to the /update API endpoint will result in an
incremental update to index
- Start standardizing implementation of the `text_to_jsonl' processors
- `text_to_jsonl; scripts already had a shared structure
- This change starts to codify that implicit structure
- Benefits
- Ease adding more `text_to_jsonl; processors
- Allow merging shared functionality
- Help with type hinting
- Drawbacks
- Lower agility to change. But this was already an implicit issue as
the text_to_jsonl processors got more deeply wired into the app
- Pillow already supports reading XMP metadata from Images
- Removes need to maintain my fork of unmaintained PyExiftool
- This also removes dependency on system Exiftool package for
XMP metadata extraction
- Add test to verify XMP metadata extracted from test images
- Remove references to Exiftool from Documentation
- Simplify tracking khoj query history, saving/sharing links
- Do not execute search, when query only contains whitespaces
- Prevents error when try process results of empty query
- As `/reload` updates index incrementally, it's relatively quick
- This makes exposing `/reload` endpoint a better default to expose
via the web interface than `the /regenerate' endpoint
- For queries with only filters in them short-circuit and return
filtered results. No need to run semantic search, re-ranking.
- Add client test for filter only query and quote query in client tests
- Image search already uses a sorted list of images to process
- Prevents index of entries to desync when entries, embeddings
generated by a separate server/app instance
- Update existings code, tests to process input-filters as list
instead of str
- Test `text_to_jsonl' get files methods to work with combination of
`input-files' and `input-filters'
Resolves#84
- Provides more control to invalidate cache on update to entries, embeddings
- Allows logging when results are being returned from cache etc
- FastAPI, Swagger API docs look better as the `search' controller not
wrapped in generically named function when using functools LRU decorator
- Issue
- Indent regex was previously catching escape sequences like newlines
- This was resulting in entries with only escape sequences in body to
be prepended to property drawers etc during rendering
- Fix
- Update indent regex to only look for spaces in each line
- Only render body when body contains non-escape characters
- Create test to prevent this regression from silently resurfacing
- Previously heading entries were not indexed to maintain search quality
- But given that there are use-cases for indexing entries with no body
- Add a configurable `index_heading_entries' field to index heading entries
- This `TextContentConfig' field is currently only used for OrgMode content
- Let the specific text_to_jsonl method decide which of the
TextContentConfig fields it needs to convert <text> type to jsonl
- This simplifies extending TextContentConfig for a specific type without
modifying all text_to_jsonl methods
- It keeps the number of args being passed to the `text_to_jsonl'
methods in check
- It's more of a hassle to not let word filter go stale on entry
updates
- Generating index on 120K lines of notes takes 1s. Loading from file
takes 0.2s. For less content load time difference will be even smaller
- Let go of startup time improvement for simplicity for now
- Comparing compiled entries is the appropriately narrow target to
identify entries that need to encode their embedding vectors. Given we
pass the compiled form of the entry to the model for encoding
- Hashing the whole entry along with it's raw form was resulting in a
bunch of entries being marked for updated as LINE: <entry_line_no>
is a string added to each entries raw format.
- This results in an update to a single entry resulting in all entries
below it in the file being marked for update (as all their line
numbers have changed)
- Log performance metrics for steps to convert org entries to jsonl
- Having Tags as sets was returning them in a different order
everytime
- This resulted in spuriously identifying existing entries as new
because their tags ordering changed
- Converting tags to list fixes the issue and identifies updated new
entries for incremental update correctly
- What
- Hash the entries and compare to find new/updated entries
- Reuse embeddings encoded for existing entries
- Only encode embeddings for updated or new entries
- Merge the existing and new entries and embeddings to get the updated
entries, embeddings
- Why
- Given most note text entries are expected to be unchanged
across time. Reusing their earlier encoded embeddings should
significantly speed up embeddings updates
- Previously we were regenerating embeddings for all entries,
even if they had existed in previous runs
- Parsed `level` argument passed to OrgNode during init is expected to
be a string, not an integer
- This was resulting in app failure only when parsing org files with
no headings, like in issue #83, as level is set to string of `*`s
the moment a heading is found in the current file
- Previously we were failing if no valid entries while computing
embeddings. This was obscuring the actual issue of no valid entries
found in the specified content files
- Throwing an exception early with clear message when no entries found
should make clarify the issue to be fixed
- See issue #83 for details
- Default config has `input_files' set to None
- This was being passed to `FileBrowser' on Initialization
- But `FileBrowser' expects `content_files' of list type, not None
- This resulted in an unexpected NoneType failure
- The logging to file code expects the config directory to already be setup
- But parent directory of config file was being set up later in code
- This resulted in app start failing with ~/.khoj dir does not exist error
- Pass file associated with entries in markdown, beancount to json converters
- Add File, Word, Date Filters to Ledger, Markdown Types
- Word, Date Filters were accidently removed from the above types yesterday
- File Filter is the only filter that newly got added
- Filter entries, embeddings by ids satisfying all filters in query
func, after each filter has returned entry ids satisfying their
individual acceptance criteria
- Previously each filter would return a filtered list of entries.
Each filter would be applied on entries filtered by previous filters.
This made the filtering order dependent
- Benefits
- Filters can be applied independent of their order of execution
- Precomputed indexes for each filter is not in danger of running
into index out of bound errors, as filters run on original entries
instead of on entries filtered by filters that have run before it
- Extract entries satisfying filter only once instead of doing
this for each filter
- Costs
- Each filter has to process all entries even if previous filters
may have already marked them as non-satisfactory
- This will help filter query to org content type using file filter
- Do not explicitly specify items being extracted from json of each
entry in text_search as all text search content types do not have
file being set in jsonl converters
- Specify just file name to get all notes associated with file at path
- E.g `query` with `file:"file1.org"` will return `entry1`
if `entry1` is in `file1.org` at `~/notes/file.org`
- Test
- Test converting simple file name filter to regex for path match
- Test file filter with space in file name
