mirror of
https://github.com/khoj-ai/khoj.git
synced 2024-11-23 15:38:55 +01:00
010486fb36
- Split once by heading (=first_non_empty) to extract current section body Otherwise child headings with same prefix as current heading will cause the section split to go into infinite loop - Also add check to prevent getting into recursive loop while trying to split entry into sub sections
411 lines
11 KiB
Python
411 lines
11 KiB
Python
import os
|
|
import re
|
|
import time
|
|
|
|
from khoj.processor.content.org_mode.org_to_entries import OrgToEntries
|
|
from khoj.processor.content.text_to_entries import TextToEntries
|
|
from khoj.utils.fs_syncer import get_org_files
|
|
from khoj.utils.helpers import is_none_or_empty
|
|
from khoj.utils.rawconfig import Entry, TextContentConfig
|
|
|
|
|
|
def test_configure_indexing_heading_only_entries(tmp_path):
|
|
"""Ensure entries with empty body are ignored, unless explicitly configured to index heading entries.
|
|
Property drawers not considered Body. Ignore control characters for evaluating if Body empty."""
|
|
# Arrange
|
|
entry = f"""*** Heading
|
|
:PROPERTIES:
|
|
:ID: 42-42-42
|
|
:END:
|
|
\t \r
|
|
"""
|
|
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
for index_heading_entries in [True, False]:
|
|
# Act
|
|
# Extract entries into jsonl from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(
|
|
org_files=data, index_heading_entries=index_heading_entries, max_tokens=3
|
|
)
|
|
|
|
# Assert
|
|
if index_heading_entries:
|
|
# Entry with empty body indexed when index_heading_entries set to True
|
|
assert len(entries) == 2
|
|
assert len(entries[1]) == 1
|
|
else:
|
|
# Entry with empty body ignored when index_heading_entries set to False
|
|
assert len(entries) == 2
|
|
assert is_none_or_empty(entries[1])
|
|
|
|
|
|
def test_extract_entries_when_child_headings_have_same_prefix():
|
|
"""Extract org entries from entries having child headings with same prefix.
|
|
Prevents regressions like the one fixed in PR #840.
|
|
"""
|
|
# Arrange
|
|
tmp_path = "tests/data/org/same_prefix_headings.org"
|
|
entry: str = """
|
|
** 1
|
|
*** 1.1
|
|
**** 1.1.2
|
|
""".strip()
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
start = time.time()
|
|
entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=2)
|
|
end = time.time()
|
|
indexing_time = end - start
|
|
|
|
# Assert
|
|
explanation_msg = (
|
|
"It should not take more than 6 seconds to index. Entry extraction may have gone into an infinite loop."
|
|
)
|
|
assert indexing_time < 6 * len(entries), explanation_msg
|
|
|
|
|
|
def test_entry_split_when_exceeds_max_tokens():
|
|
"Ensure entries with compiled words exceeding max_tokens are split."
|
|
# Arrange
|
|
tmp_path = "/tmp/test.org"
|
|
entry = f"""*** Heading
|
|
\t\r
|
|
Body Line
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
expected_heading = f"* {tmp_path}\n** Heading"
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(org_files=data)
|
|
assert len(entries) == 2
|
|
# Split each entry from specified Org files by max tokens
|
|
entries = TextToEntries.split_entries_by_max_tokens(entries[1], max_tokens=5)
|
|
|
|
# Assert
|
|
assert len(entries) == 2
|
|
# Ensure compiled entries split by max tokens start with entry heading (for search context)
|
|
assert all([entry.compiled.startswith(expected_heading) for entry in entries])
|
|
|
|
|
|
def test_entry_split_drops_large_words():
|
|
"Ensure entries drops words larger than specified max word length from compiled version."
|
|
# Arrange
|
|
entry_text = f"""First Line
|
|
dog=1\n\r\t
|
|
cat=10
|
|
car=4
|
|
book=2
|
|
"""
|
|
entry = Entry(raw=entry_text, compiled=entry_text)
|
|
|
|
# Act
|
|
# Split entry by max words and drop words larger than max word length
|
|
processed_entry = TextToEntries.split_entries_by_max_tokens([entry], max_word_length=5)[0]
|
|
|
|
# Assert
|
|
# Ensure words larger than max word length are dropped
|
|
# Ensure newline characters are considered as word boundaries for splitting words. See #620
|
|
words_to_keep = ["First", "Line", "dog=1", "car=4"]
|
|
words_to_drop = ["cat=10", "book=2"]
|
|
assert all([word for word in words_to_keep if word in processed_entry.compiled])
|
|
assert not any([word for word in words_to_drop if word in processed_entry.compiled])
|
|
assert len(processed_entry.compiled.split()) == len(entry_text.split()) - 2
|
|
|
|
|
|
def test_parse_org_file_into_single_entry_if_small(tmp_path):
|
|
"Parse org file into single entry if it fits within the token limits."
|
|
# Arrange
|
|
original_entry = f"""
|
|
* Heading 1
|
|
body line 1
|
|
** Subheading 1.1
|
|
body line 1.1
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": original_entry,
|
|
}
|
|
expected_entry = f"""
|
|
* Heading 1
|
|
body line 1
|
|
|
|
** Subheading 1.1
|
|
body line 1.1
|
|
|
|
""".lstrip()
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
extracted_entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=12)
|
|
assert len(extracted_entries) == 2
|
|
for entry in extracted_entries[1]:
|
|
entry.raw = clean(entry.raw)
|
|
|
|
# Assert
|
|
assert len(extracted_entries[1]) == 1
|
|
assert entry.raw == expected_entry
|
|
|
|
|
|
def test_parse_org_entry_with_children_as_single_entry_if_small(tmp_path):
|
|
"Parse org entry with child headings as single entry only if it fits within the tokens limits."
|
|
# Arrange
|
|
entry = f"""
|
|
* Heading 1
|
|
body line 1
|
|
** Subheading 1.1
|
|
body line 1.1
|
|
* Heading 2
|
|
body line 2
|
|
** Subheading 2.1
|
|
longer body line 2.1
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
first_expected_entry = f"""
|
|
* {tmp_path}
|
|
** Heading 1.
|
|
body line 1
|
|
|
|
*** Subheading 1.1.
|
|
body line 1.1
|
|
|
|
""".lstrip()
|
|
second_expected_entry = f"""
|
|
* {tmp_path}
|
|
** Heading 2.
|
|
body line 2
|
|
|
|
""".lstrip()
|
|
third_expected_entry = f"""
|
|
* {tmp_path} / Heading 2
|
|
** Subheading 2.1.
|
|
longer body line 2.1
|
|
|
|
""".lstrip()
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
extracted_entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=12)
|
|
|
|
# Assert
|
|
assert len(extracted_entries) == 2
|
|
assert len(extracted_entries[1]) == 3
|
|
assert extracted_entries[1][0].compiled == first_expected_entry, "First entry includes children headings"
|
|
assert extracted_entries[1][1].compiled == second_expected_entry, "Second entry does not include children headings"
|
|
assert extracted_entries[1][2].compiled == third_expected_entry, "Third entry is second entries child heading"
|
|
|
|
|
|
def test_separate_sibling_org_entries_if_all_cannot_fit_in_token_limit(tmp_path):
|
|
"Parse org sibling entries as separate entries only if it fits within the tokens limits."
|
|
# Arrange
|
|
entry = f"""
|
|
* Heading 1
|
|
body line 1
|
|
** Subheading 1.1
|
|
body line 1.1
|
|
* Heading 2
|
|
body line 2
|
|
** Subheading 2.1
|
|
body line 2.1
|
|
* Heading 3
|
|
body line 3
|
|
** Subheading 3.1
|
|
body line 3.1
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
first_expected_entry = f"""
|
|
* {tmp_path}
|
|
** Heading 1.
|
|
body line 1
|
|
|
|
*** Subheading 1.1.
|
|
body line 1.1
|
|
|
|
""".lstrip()
|
|
second_expected_entry = f"""
|
|
* {tmp_path}
|
|
** Heading 2.
|
|
body line 2
|
|
|
|
*** Subheading 2.1.
|
|
body line 2.1
|
|
|
|
""".lstrip()
|
|
third_expected_entry = f"""
|
|
* {tmp_path}
|
|
** Heading 3.
|
|
body line 3
|
|
|
|
*** Subheading 3.1.
|
|
body line 3.1
|
|
|
|
""".lstrip()
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
# Max tokens = 30 is in the middle of 2 entry (24 tokens) and 3 entry (36 tokens) tokens boundary
|
|
# Where each sibling entry contains 12 tokens per sibling entry * 3 entries = 36 tokens
|
|
extracted_entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=30)
|
|
|
|
# Assert
|
|
assert len(extracted_entries) == 2
|
|
assert len(extracted_entries[1]) == 3
|
|
assert extracted_entries[1][0].compiled == first_expected_entry, "First entry includes children headings"
|
|
assert extracted_entries[1][1].compiled == second_expected_entry, "Second entry includes children headings"
|
|
assert extracted_entries[1][2].compiled == third_expected_entry, "Third entry includes children headings"
|
|
|
|
|
|
def test_entry_with_body_to_entry(tmp_path):
|
|
"Ensure entries with valid body text are loaded."
|
|
# Arrange
|
|
entry = f"""*** Heading
|
|
:PROPERTIES:
|
|
:ID: 42-42-42
|
|
:END:
|
|
\t\r
|
|
Body Line 1
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=3)
|
|
|
|
# Assert
|
|
assert len(entries) == 2
|
|
assert len(entries[1]) == 1
|
|
|
|
|
|
def test_file_with_entry_after_intro_text_to_entry(tmp_path):
|
|
"Ensure intro text before any headings is indexed."
|
|
# Arrange
|
|
entry = f"""
|
|
Intro text
|
|
|
|
* Entry Heading
|
|
entry body
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=3)
|
|
|
|
# Assert
|
|
assert len(entries) == 2
|
|
assert len(entries[1]) == 2
|
|
|
|
|
|
def test_file_with_no_headings_to_entry(tmp_path):
|
|
"Ensure files with no heading, only body text are loaded."
|
|
# Arrange
|
|
entry = f"""
|
|
- Bullet point 1
|
|
- Bullet point 2
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(org_files=data, max_tokens=3)
|
|
|
|
# Assert
|
|
assert len(entries) == 2
|
|
assert len(entries[1]) == 1
|
|
|
|
|
|
def test_get_org_files(tmp_path):
|
|
"Ensure Org files specified via input-filter, input-files extracted"
|
|
# Arrange
|
|
# Include via input-filter globs
|
|
group1_file1 = create_file(tmp_path, filename="group1-file1.org")
|
|
group1_file2 = create_file(tmp_path, filename="group1-file2.org")
|
|
group2_file1 = create_file(tmp_path, filename="group2-file1.org")
|
|
group2_file2 = create_file(tmp_path, filename="group2-file2.org")
|
|
# Include via input-file field
|
|
orgfile1 = create_file(tmp_path, filename="orgfile1.org")
|
|
# Not included by any filter
|
|
create_file(tmp_path, filename="orgfile2.org")
|
|
create_file(tmp_path, filename="text1.txt")
|
|
|
|
expected_files = set(
|
|
[
|
|
os.path.join(tmp_path, file.name)
|
|
for file in [group1_file1, group1_file2, group2_file1, group2_file2, orgfile1]
|
|
]
|
|
)
|
|
|
|
# Setup input-files, input-filters
|
|
input_files = [tmp_path / "orgfile1.org"]
|
|
input_filter = [tmp_path / "group1*.org", tmp_path / "group2*.org"]
|
|
|
|
org_config = TextContentConfig(
|
|
input_files=input_files,
|
|
input_filter=[str(filter) for filter in input_filter],
|
|
compressed_jsonl=tmp_path / "test.jsonl",
|
|
embeddings_file=tmp_path / "test_embeddings.jsonl",
|
|
)
|
|
|
|
# Act
|
|
extracted_org_files = get_org_files(org_config)
|
|
|
|
# Assert
|
|
assert len(extracted_org_files) == 5
|
|
assert set(extracted_org_files.keys()) == expected_files
|
|
|
|
|
|
def test_extract_entries_with_different_level_headings(tmp_path):
|
|
"Extract org entries with different level headings."
|
|
# Arrange
|
|
entry = f"""
|
|
* Heading 1
|
|
** Sub-Heading 1.1
|
|
* Heading 2
|
|
"""
|
|
data = {
|
|
f"{tmp_path}": entry,
|
|
}
|
|
|
|
# Act
|
|
# Extract Entries from specified Org files
|
|
entries = OrgToEntries.extract_org_entries(org_files=data, index_heading_entries=True, max_tokens=3)
|
|
assert len(entries) == 2
|
|
for entry in entries[1]:
|
|
entry.raw = clean(f"{entry.raw}")
|
|
|
|
# Assert
|
|
assert len(entries[1]) == 2
|
|
assert entries[1][0].raw == "* Heading 1\n** Sub-Heading 1.1\n", "Ensure entry includes heading ancestory"
|
|
assert entries[1][1].raw == "* Heading 2\n"
|
|
|
|
|
|
# Helper Functions
|
|
def create_file(tmp_path, entry=None, filename="test.org"):
|
|
org_file = tmp_path / filename
|
|
org_file.touch()
|
|
if entry:
|
|
org_file.write_text(entry)
|
|
return org_file
|
|
|
|
|
|
def clean(entry):
|
|
"Remove properties from entry for easier comparison."
|
|
return re.sub(r"\n:PROPERTIES:(.*?):END:", "", entry, flags=re.DOTALL)
|